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ZORA Publication List

Publications

Journal Article
- 2024
  - Luger, Peter; Dittrich, Birger; Schmidt, Heinz-Jürgen (2024). A plant cyclic nonapeptide of orbitide type: an electron density study. Zeitschrift für Naturforschung. B, 79(2-3):105-111.
  - Kienbeck, Kasimir; Malfertheiner, Lukas; Zelger-Paulus, Susann; Johannsen, Silke; von Mering, Christian; Sigel, Roland K O (2024). Identification of HDV-like theta ribozymes involved in tRNA-based recoding of gut bacteriophages. Nature Communications, 15(1):1559.
  - Bussy, Augustin; Hutter, Jürg (2024). Efficient periodic resolution-of-the-identity Hartree–Fock exchange method with k-point sampling and Gaussian basis sets. Journal of Chemical Physics, 160(6):064116.
  - Schittich, Anna‐Ricarda; Fenner, Kathrin; Stedmon, Colin A; Xu, Jianxin; McKnight, Ursula S; Smets, Barth F (2024). Coupling pathway prediction and fluorescence spectroscopy to assess the impact of auxiliary substrates on micropollutant biodegradation. Environmental Microbiology, 26(2):e16560.
  - Knobloch, Marco C; Hutter, Jules; Diaz, Oscar Mendo; Zennegg, Markus; Vogel, Jean Claude; Durisch, Edith; Stalder, Urs; Bigler, Laurent; Kern, Susanne; Bleiner, Davide; Heeb, Norbert V (2024). Evolution of chlorinated paraffin and olefin fingerprints in sewage sludge from 1993 to 2020 of a Swiss municipal wastewater treatment plant. Chemosphere, 349:140825.
  - Csucker, Joshua; Decrausaz, Nathalie; Jäggi, Sarah Isabella; Blacque, Olivier; Spingler, Bernhard; Alberto, Roger (2024). Synthesis and Photophysical Evaluation of 3,3’‐Nitrogen Bis‐Substituted $fac$‐[Re(CO)$_3$(Diimine)Br] Complexes. Helvetica Chimica Acta, 107(2):e202300239.
  - Meyer Sauteur, Patrick M; Beeton, Michael L; European Society of Clinical Microbiology and Infectious Disease (2024). Mycoplasma pneumoniae: delayed re-emergence after COVID-19 pandemic restrictions. The Lancet Microbe, 5(2):e100-e101.
  - Wan, Wenchao; Zhao, Yonggui; Meng, Jie; Allen, Christopher S; Zhou, Ying; Patzke, Greta R (2024). Tailoring C─N Containing Compounds into Carbon Nanomaterials with Tunable Morphologies for Electrocatalytic Applications. Small, 20(7):e2304663.
  - Zhao, Chenxiao; Huang, Qiang; Valenta, Leoš; Eimre, Kristjan; Yang, Lin; Yakutovich, Aliaksandr V; Xu, Wangwei; Ma, Ji; Feng, Xinliang; Juríček, Michal; Fasel, Roman; Ruffieux, Pascal; Pignedoli, Carlo A (2024). Tailoring Magnetism of Graphene Nanoflakes via Tip-Controlled Dehydrogenation. Physical Review Letters, 132(4):046201.
  - Vandaele, Eva; Mališ, Momir; Luber, Sandra (2024). A Local Diabatisation Method for Two-State Adiabatic Conical Intersections. Journal of Chemical Theory and Computation, 20(2):856-872.
  - Ahmadi, Soroush; Spingler, Bernhard; Rohani, Sohrab (2024). Improving Crystal Morphology through Cocrystallization: A Case Study of Rufinamide-Trimesic Acid Cocrystal. Crystal Growth & Design, 24(3):1170-1179.
  - Taghizadeh Shool, Maryam; Amiri Rudbari, Hadi; Cuevas-Vicario, José V; Rodríguez-Rubio, Andrea; Stagno, Claudio; Iraci, Nunzio; Efferth, Thomas; Omer, Ejlal A; Schirmeister, Tanja; Blacque, Olivier; Moini, Nakisa; Sheibani, Esmail; Micale, Nicola (2024). Investigating the Cytotoxicity of Ru(II) Polypyridyl Complexes by Changing the Electronic Structure of Salicylaldehyde Ligands. Inorganic Chemistry, 63(2):1083-1101.
  - Stein, Frederick; Hutter, Jürg (2024). Massively parallel implementation of gradients within the random phase approximation: Application to the polymorphs of benzene. Journal of Chemical Physics, 160(2):024120.
  - Roithmeyer, Helena; Sévery, Laurent; Moehl, Thomas; Spingler, Bernhard; Blacque, Olivier; Fox, Thomas; Iannuzzi, Marcella; Tilley, S David (2024). Electrocatalytic Ammonia Oxidation with a Tailored Molecular Catalyst Heterogenized via Surface Host–Guest Complexation. Journal of the American Chemical Society, 146(1):430-436.
  - Münch, Nathalia Simea; Das, Subir; Seeger, Stefan (2024). Unveiling the effect of CaCl$_2$ on amyloid β aggregation $via$ supercritical angle Raman and fluorescence spectroscopy and microscopy. Physical Chemistry Chemical Physics (PCCP), 26(41):26266-26276.
  - Creazzo, Fabrizio; Luber, Sandra (2024). Water–air interface revisited by means of path-integral $ab$ $initio$ molecular dynamics. Physical Chemistry Chemical Physics (PCCP), 26(31):21290-21302.
  - Appiarius, Yannik; Míguez-Lago, Sandra; Puylaert, Pim; Wolf, Noah; Kumar, Sourabh; Molkenthin, Martin; Miguel, Delia; Neudecker, Tim; Juríček, Michal; Campaña, Araceli G; Staubitz, Anne (2024). Boosting quantum yields and circularly polarized luminescence of penta- and hexahelicenes by doping with two BN-groups. Chemical Science, 15(2):466-476.
  - Dereka, Bogdan; Maroli, Nikhil; Poronik, Yevgen M; Gryko, Daniel T; Kananenka, Alexei A (2024). Excited-state symmetry breaking is an ultrasensitive tool for probing microscopic electric fields. Chemical Science, 15(38):15565-15576.
  - Tamás, Bálint; Willi, Pietro Luigi; Bürgisser, Héloïse; Hartrampf, Nina (2024). A robust data analytical method to investigate sequence dependence in flow-based peptide synthesis. Reaction Chemistry & Engineering, 9(4):825-832.
  - Williams, Elyse T; Schiefelbein, Kevin; Schuster, Matthias; Ahmed, Ikhlas M M; De Vries, Marije; Beveridge, Rebecca; Zerbe, Oliver; Hartrampf, Nina (2024). Rapid flow-based synthesis of post-translationally modified peptides and proteins: a case study on MYC's transactivation domain. Chemical Science, 15(23):8756-8765.
  - Palmeira-Mello, Marcos V; Costa, Analu R; de Oliveira, Leticia P; Blacque, Olivier; Gasser, Gilles; Batista, Alzir A (2024). Exploring the potential of ruthenium (ll)-phosphine–mercapto complexes as new anticancer agents. Dalton Transactions, 53(26):10947-10960.
  - Forooghi, Kimia; Amiri Rudbari, Hadi; Stagno, Claudio; Iraci, Nunzio; Cuevas-Vicario, José V; Kordestani, Nazanin; Schirmeister, Tanja; Efferth, Thomas; Omer, Ejlal A; Moini, Nakisa; Aryaeifar, Mahnaz; Blacque, Olivier; Azadbakht, Reza; Micale, Nicola (2024). Structural features and antiproliferative activity of Pd($ \mathrm{II} $) complexes with halogenated ligands: a comparative study between Schiff base and reduced Schiff base complexes. Dalton Transactions, 53(25):10571-10591.
  - Manikandan, Balasubramaniyam; Thamotharan, Subbiah; Blacque, Olivier; Selva Ganesan, Subramaniapillai (2024). Deconstructive annulation mediated one-pot synthesis of xanthene derivatives. Organic & Biomolecular Chemistry, 22(16):3279-3286.
  - Aryaeifar, Mahnaz; Rudbari, Hadi Amiri; Moreno-Pineda, Eufemio; Cuevas-Vicario, José V; Paul, Sagar; Schulze, Michael; Wernsdorfer, Wolfgang; Lloret, Francisco; Moini, Nakisa; Blacque, Olivier (2024). Synthesis, characterization and magnetic properties of halogenated tetranuclear cubane-like nickel($ \mathrm{II}$) complexes. New Journal of Chemistry, 48(8):3603-3613.
  - Janeková, Hana; Friedman, Hannah C; Russo, Marina; Zyberaj, Mergime; Ahmed, Tasnim; Hua, Ash Sueh; Sica, Anthony V; Caram, Justin R; Stacko, Peter (2024). Deuteration of heptamethine cyanine dyes enhances their emission efficacy. Chemical Communications, 60(8):1000-1003.
  - Besmer, Manuel Luca; Schwitter, Flurina; Battistin, Federica; Braband, Henrik; Fox, Thomas; Spingler, Bernhard; Alberto, Roger (2024). Induced $fac-mer$ rearrangements in {M(CO)$_3$}$^{+}$ complexes (M = Re, $^{99(m)}$Tc) by a PNP ligand. Dalton Transactions, 53(4):1434-1438.
  - Velasquez, Nicolas; B Nunes, Fernanda; Travnikova, Oksana; Ismail, Iyas; Guillemin, Renaud; Martins, Jessica B; Céolin, Denis; Journel, Loïc; Fillaud, Laure; Koulentianos, Dimitris; Kamal, Chinnathambi; Püttner, Ralph; Piancastelli, Maria Novella; Simon, Marc; Odelius, Michael; Iannuzzi, Marcella; Marchenko, Tatiana (2024). X-ray induced ultrafast charge transfer in thiophene-based conjugated polymers controlled by core-hole clock spectroscopy. Physical Chemistry Chemical Physics (PCCP), 26(2):1234-1244.
  - Rehm, Karoline; Hankele, Anna-Katharina; Ulbrich, Susanne E; Bigler, Laurent (2024). Quantification of glucocorticoid and progestogen metabolites in bovine plasma, skimmed milk and saliva by UHPLC-HR-MS with polarity switching. Analytica Chimica Acta, 1287:342118.
  - Vögtli, Marius; Schläpfer, Daniel; Schuman, Meredith Christine; Schaepman, Michael E; Kneubühler, Mathias; Damm, Alexander (2024). Effects of atmospheric, topographic, and BRDF correction on imaging spectroscopy-derived data products. IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 17:109-126.
  - Baumann, Christian; Zerbe, Oliver (2024). The role of leucine and isoleucine in tuning the hydropathy of class A GPCRs. Proteins, 92(1):15-23.
  - Bosshard, Julian; Fenner, Kathrin; Singer, Heinz; Anliker, Sabine; Gulde, Rebekka (2024). Abwasser aus chemisch-pharmazeutischen Synthesebetrieben. Charakterisierung der Stoffeinträge in Gewässer. Aqua & Gas, 104(3):43-49.
  - Liu, Pengfei; Baumann, Christian; Streuli, David; Zerbe, Oliver (2024). Mechanistic insights into uptake, transfer and exchange of metal ions by the three metal-clusters of a metalloprotein. Protein Science, 33(11):e5186.
- 2023
  - Hartrampf, Nina (2023). Peptide Therapeutics Forum 2023. Chimia, 77(12):877-878.
  - Jung, Erik; Kraimps, Anastassia; Dittmann, Silvia; Griesser, Tizian; Costafrolaz, Jordan; Mattenberger, Yves; Jurt, Simon; Viollier, Patrick H; Sander, Peter; Sievers, Susanne; Gademann, Karl (2023). Phenolic Substitution in Fidaxomicin: A Semisynthetic Approach to Antibiotic Activity Across Species. Chembiochem, 24(24):e202300570.
  - Schreck, Moritz-Valentin; Burgard, Caroline; Schmidtke, Alexander; Hierlmeier, Ina; Stemler, Tobias; Maus, Stephan; Rosar, Florian; Jung, Martin; Speicher, Andreas; Ezziddin, Samer; Holland, Jason P; Bartholomä, Mark D (2023). Radiometal Complexes as Pharmacokinetic Modifiers: A Potent $^{68}$Ga-Labeled Gastrin-Releasing Peptide Receptor Antagonist Based on the Macrocyclic Metal Chelator NODIA-Me. Molecular Pharmaceutics, 20(12):6463-6473.
  - Karakurt-Fischer, Sema; Johnson, David R; Fenner, Kathrin; Hafner, Jasmin (2023). Making waves: Enhancing pollutant biodegradation via rational engineering of microbial consortia. Water research, 247:120756.
  - Gourdon‐Grünewaldt, Lisa; Blacque, Olivier; Gasser, Gilles; Cariou, Kevin (2023). Towards Copper(I) Clusters for Photo‐Induced Oxidation of Biological Thiols in Living Cells**. Chembiochem, 24(23):e202300496.
  - Calderón, Jacqueline C; Herrera, Alberto; Heinemann, Frank W; Langer, Jens; Linden, Anthony; Chelouan, Ahmed; Grasruck, Alexander; Añez, Rafael; Clark, Timothy; Dorta, Romano (2023). Stereochemical Stability of Planar-Chiral Benzazepine Tricyclics: Inversion Energies of P- and S-Alkene Ligands. Journal of Organic Chemistry, 88(23):16144-16154.
  - Fan, Mingzhen; Kiefer, Patrick; Charki, Paul; Hedberg, Christian; Seibel, Jürgen; Vorholt, Julia A; Hilbi, Hubert (2023). The Legionella autoinducer LAI-1 is delivered by outer membrane vesicles to promote interbacterial and interkingdom signaling. Journal of Biological Chemistry, 299(12):105376.
  - Geckeler, Christian; Ramos, Sergio E; Schuman, Meredith Christine; Mintchev, Stefano (2023). Robotic volatile sampling for early detection of plant stress. IEEE Robotics and Automation Magazine, 30(4):41-51.
  - Coll, Claudia; Fenner, Kathrin; Screpanti, Claudio (2023). Early Assessment of Biodegradability of Small Molecules to Support the Chemical Design in Agro & Pharma R&D. Chimia, 77(11):742-749.
  - Cucuzza, Stefano; Sitnik, Malgorzata; Jurt, Simon; Michel, Erich; Dai, Wenzhao; Müntener, Thomas; Ernst, Patrick; Häussinger, Daniel; Plückthun, Andreas; Zerbe, Oliver (2023). Unexpected dynamics in femtomolar complexes of binding proteins with peptides. Nature Communications, 14(1):7823.
  - Martin, Annabell; Rivera-Fuentes, Pablo (2023). A general strategy to develop fluorogenic polymethine dyes for bioimaging. Nature Chemistry, 16(1):28-35.
  - Moursy, Ahmed; Cléry, Antoine; Gerhardy, Stefan; Betz, Katharina M; Rao, Sanjana; Mazur, Jarosław; Campagne, Sébastien; Beusch, Irene; Duszczyk, Malgorzata M; Robinson, Mark D; Panse, Vikram Govind; Allain, Frédéric H-T (2023). RNA recognition by Npl3p reveals U2 snRNA-binding compatible with a chaperone role during splicing. Nature Communications, 14(1):7166.
  - Alberto, Roger (2023). From carbonyls to $π$-aromatic arenes: A thirty years journey through organometallic technetium chemistry. Journal of Organometallic Chemistry, 1000:122828.
  - Kama, Dumisani V; Frei, Angelo; Twigge, Linette; Brink, Alice; Alberto, Roger; Roodt, Andreas (2023). Spectroscopic, X-ray crystallographic and preliminary biological screening study of unsymmetrical diphosphinoamine (PNP’) and monodentate aminophosphine (PNH) ligands coordinated to Pt(II). Inorganica Chimica Acta, 557:121656.
  - Al-Wahaibi, Lamya H; Mangaiyarkarasi, Sivashanmugam; Blacque, Olivier; Hassan, Hanan M; El-Emam, Ali A; Percino, M Judith; Thamotharan, Subbiah (2023). Unusual short intramolecular N–H⋅⋅⋅H–C contact and weak intermolecular interactions in two N-(adamantan-1-yl)piperazine carbothioamides: Crystallography, quantum chemical study and in vitro urease inhibitory activity. Journal of Molecular Structure THEOCHEM, 1291:136052.
  - Baumann, Christian; Chiang, Wan‐Chin; Valsecchi, Renato; Jurt, Simon; Deluigi, Mattia; Schuster, Matthias; Rosengren, Karl Johan; Plückthun, Andreas; Zerbe, Oliver (2023). Side‐chain dynamics of the α$_{1B}$ ‐adrenergic receptor determined by NMR via methyl relaxation. Protein Science, 32(11):e4801.
  - Rudin, Christoph; Bollen, Nena; Hong, Samuel L; Wegner, Fanny; Politi, Lida; Mellou, Kassiani; Geenen, Caspar; Gorissen, Sarah; Verhasselt, Bruno; Durkin, Keith; Henin, Coralie; Logist, Anne-Sophie; Dellicour, Simon; Resa, Tobias; Stadler, Tanja; Maes, Piet; Cuypers, Lize; André, Emmanuel; Egli, Adrian; Baele, Guy (2023). Investigation of an international water polo tournament in Czechia as a potential source for early introduction of the SARS-CoV-2 Omicron variant into Belgium, Switzerland and Germany, November 2021. Eurosurveillance, 28(45):2300018.
  - Al-Omary, Fatmah A M; Blacque, Olivier; Alanazi, Fahdah S; Tiekink, Edward R T; El-Emam, Ali A (2023). Crystal structure of 2-[(4-bromobenzyl)thio]- 5-(5-bromothiophen-2-yl)-1,3,4-oxadiazole, C$_{13}$H$_{8}$Br$_{2}$N$_{2}$OS$_{2}$. Zeitschrift für Kristallographie - New Crystal Structures, 238(5):911-913.

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