Publications

ZORA Publication List

Publications

• 2015

  • Journal Article

    • Fiorini, Erica; Börner, Richard; Sigel, Roland K O (2015). Mimicking the in vivo Environment – The Effect of Crowding on RNA and Biomacromolecular Folding and Activity. CHIMIA International Journal for Chemistry, 69(4):207-212.
    • Kowerko, Danny; König, Sebastian L B; Skilandat, Miriam; Kruschel, Daniela; Hadzic, Mélodie C A S; Cardo, Lucia; Sigel, Roland K O (2015). Cation-induced kinetic heterogeneity of the intron–exon recognition in single group II introns. Proceedings of the National Academy of Sciences of the United States of America, 112(11):3403-3408.
    • Freisinger, Eva; Sigel, Roland K O (2015). Preface for the JIB Special Issue for the 12th European Biological Inorganic Chemistry Conference (EuroBIC 12) in Zurich, Switzerland, August 24–28, 2014. Journal of Inorganic Biochemistry, 148:1.
    • Schmitz, Anita G; Zelger-Paulus, Susann; Gasser, Gilles; Sigel, Roland K O (2015). Internal Labeling Strategy of Large RNAs with Minimal Perturbation Using Fluorescent PNA. Chembiochem, 16:1302-1306.

  • Book Section

    • Musiari, Anastasia; Rowinska-Zyrek, Magdalena; Gallo, Sofia; Sigel, Roland K O (2015). Metal Ions in Ribozymes and Riboswitches. In: Stulz, Eugen; Clever, Guido H. DNA in Supramolecular Chemistry and Nanotechnology. Chichester, West Sussex: John Wiley & Sons Ltd., 412-433.

• 2014

  • Journal Article

    • Skilandat, Miriam; Sigel, Roland K O (2014). The role of Mg(II) in DNA cleavage site recognition in group II intron ribozymes: Solution structure and metal ion binding sites of the RNA{middle dot}DNA complex. Journal of Biological Chemistry, 289(30):20650-20663.
    • Sripakdeevong, Parin; Cevec, Mirko; Chang, Andrew T; Erat, Michèle C; Ziegeler, Melanie; Zhao, Qin; Fox, Georg E; Gao, Xiaolian; Kennedy, Scott D; Kierzek, Ryszard; Nikonowicz, Edward P; Schwalbe, Harald; Sigel, Roland K O; Turner, Douglas H; Das, Rhiju (2014). Structure determination of noncanonical RNA motifs guided by $^1$H NMR chemical shifts. Nature Methods, 11(4):413-416.
    • Grazul, Magdalena; Sigel, Roland K O; Maake, Caroline; Besic-Gyenge, Emina; Lorenz, Ingo-Peter; Mayer, Peter; Czyz, Malgorzata; Budzisz, Elzbieta (2014). Synthesis, structure, physico-chemical and biological properties of metal(II) complexes with 5-amino-8-methyl-4H-benzopyran-4-one. Polyhedron, 67:136-144.
    • Choudhary, Pallavi K; Sigel, Roland K O (2014). Mg(2+)-induced conformational changes in the btuB riboswitch from E. coli. RNA, 20(1):36-45.
    • Skilandat, Miriam; Rowinska-Zyrek, Magdalena; Sigel, Roland K O (2014). Solution structure and metal ion binding sites of the human CPEB3 ribozyme’s P4 domain. Journal of Biological Inorganic Chemistry, 19(6):903-912.
    • Kruschel, Daniela; Skilandat, Miriam; Sigel, Roland K O (2014). NMR structure of the 5' splice site in the group IIB intron Sc.ai5 - conformational requirements for exon-intron recognition. RNA, 20(3):295-307.
    • Leonidova, Anna; Pierroz, Vanessa; Rubbiani, Riccardo; Lan, Yanjun; Schmitz, Anita G; Kaech, Andres; Sigel, Roland K O; Ferrari, Stefano; Gasser, Gilles (2014). Photo-induced uncaging of a specific Re(I) organometallic complex in living cells. Chemical Science, 5:4044-4056.

  • Book Section

    • Schaffer, Michelle F; Choudhary, Pallavi K; Sigel, Roland K O (2014). The AdoCbl–Riboswitch Interaction Investigated by In-Line Probing and Surface Plasmon Resonance Spectroscopy (SPR). In: Burke-Aguero, Donald H. Riboswitch Discovery, Structure and Function. Amsterdam: Elsevier, 467-488.
    • Choudhary, Pallavi K; Gallo, Sofia; Sigel, Roland K O (2014). Monitoring Global Structural Changes and Specific Metal-Ion-Binding Sites in RNA by In-line Probing and Tb(III) Cleavage. In: Waldsich, C. RNA Folding. Wien: Springer, 143-158.

• 2013

  • Journal Article

    • Rowinska-Zyrek, M; Skilandat, M; Sigel, Roland K O (2013). Hexaamminecobalt(III) - Probing metal ion binding sites in nucleic acids by NMR spectroscopy. Zeitschrift für Anorganische und Allgemeine Chemie, 639(8-9):1313-1320.
    • Domínguez-Martín, A; Johannsen, S; Sigel, Astrid; Operschall, B P; Song, B; Sigel, Helmut; Okruszek, A; González-Pérez, J M; Niclós-Gutiérrez, J; Sigel, Roland K O (2013). Intrinsic acid-base properties of a hexa-2'-deoxynucleoside pentaphosphate, d(ApGpGpCpCpT): neighboring effects and isomeric equilibria. Chemistry - A European Journal, 19(25):8163-8181.
    • König, S L B; Huppert, J L; Sigel, Roland K O; Evans, A C (2013). Distance-dependent duplex DNA destabilization proximal to G-quadruplex/i-motif sequences. Nucleic Acids Research, 41(15):7453-7461.
    • König, Sebastian L B; Kowerko, Danny; Sigel, Roland K O (2013). Kinetic subpopulations detected by single-molecule spectroscopy: fundamental property of functional nucleic acids or experimental artefact?. CHIMIA International Journal for Chemistry, 67(4):240-243.
    • Kumbhar, S; Johannsen, S; Sigel, Roland K O; Waller, M P; Müller, J (2013). A QM/MM refinement of an experimental DNA structure with metal-mediated base pairs. Journal of Inorganic Biochemistry, 127:203-210.
    • Donghi, D; Pechlaner, M; Finazzo, C; Knobloch, B; Sigel, Roland K O (2013). The structural stabilization of the K three-way junction by Mg(II) represents the first step in the folding of a group II intron. Nucleic Acids Research, 41(4):2489-2504.
    • König, S L B; Liyanage, P S; Sigel, Roland K O; Rueda, D (2013). Helicase-mediated changes in RNA structure at the single-molecule level. RNA biology, 10(1):133-148.
    • Phongtongpasuk, Siriporn; Paulus, Susann; Schnabl, Joachim; Sigel, Roland K O; Spingler, Bernhard; Hannon, Michael J; Freisinger, Eva (2013). Binding of a Designed Anti-Cancer Drug to the Central Cavity of an RNA Three-Way Junction. Angewandte Chemie, 125(44):11727-11730.
    • König, Sebastian L B; Hadzic, Mélodie C A S; Fiorini, Erica; Börner, Richard; Kowerko, Danny; Blanckenhorn, Wolf U; Sigel, Roland K O (2013). BOBA FRET: Bootstrap-based analysis of single-molecule FRET data. PLoS ONE, 8(12):e84157.
    • Choudhary, P K; Duret, A; Rohrbach-Brandt, E; Holliger, C; Sigel, Roland K O; Maillard, J (2013). Diversity of cobalamin riboswitches in the corrinoid-producing organohalide respirer Desulfitobacterium hafniense. Journal of Bacteriology, 195(22):5186-5195.
    • Phongtongpasuk, S; Paulus, S; Schnabl, J; Sigel, Roland K O; Spingler, Bernhard; Hannon, M J; Freisinger, Eva (2013). Binding of a designed anti-cancer drug to the central cavity of an RNA three-way junction. Angewandte Chemie Internationale Edition, 52(44):11513-11516.
    • Pechlaner, M; Sigel, Roland K O; van Gunsteren, W; Dolenc, J (2013). Structure and conformational dynamics of the domain 5 RNA hairpin of a bacterial group II Intron revealed by solution NMR and molecular dynamics simulations. Biochemistry, 52:7099-7113.

  • Book Section

    • Sigel, Helmut; Sigel, Roland K O (2013). Metal ion interactions with nucleic acids and their constituents. In: Reedijk, J; Poepelmeier, K. Comprehensive Inorganic Chemistry. Oxford: Elsevier, 623-660.
    • Skilandat, M; Sigel, Roland K O (2013). Ribozymes. In: Maloy, S; Hughes, K. Brenner's Encyclopedia of Genetics. San Diego: Elsevier, 254-258.
    • Sigel, Roland K O; Skilandat, Miriam; Sigel, Astrid; Operschall, Bert P; Sigel, Helmut (2013). Complex formation of cadmium with sugar residues, nucleobases, phosphates, nucleotides, and nucleic acids. In: Sigel, Astrid; Sigel, Helmut; Sigel, Roland K O. Cadmium: From Toxicity to Essentiality. Dordrecht: Springer, 191-274.

• 2012

  • Journal Article

    • Donghi, D; Sigel, Roland K O (2012). Metal Ion-RNA interactions studied via multinuclear NMR. Methods in Molecular Biology, (848):253-274.
    • Cardo, L; Karunatilaka, K S; Rueda, D; Sigel, Roland K O (2012). Single molecule FRET characterization of lage ribozyme folding. Methods in Molecular Biology, (848):227-252.
    • Megger, N; Johannsen, S; Mueller, J; Sigel, Roland K O (2012). Synthesis and acid-Base properties of an imidazole-containing nucleotide analog, 1-(2'-Deoxy-B-D-ribofuranosyl)imidazole 5'-monophosphate (dImMP2-). International Journal of Chemistry Research, 9(9, SI):2050-2063.
    • Korth, M M T; Sigel, Roland K O (2012). Unusually high-affinity Mg2+ binding at the AU-rich sequence within the antiterminator hairpin of a Mg2+ riboswitch. Chemistry & Biodiversity, 9(9, SI):2035-2049.
    • Erat, M C; Coles, J; Finazzo, C; Knobloch, B; Sigel, Roland K O (2012). Accurate analysis of Mg2+ binding to RNA: From classical methods to a novel iterative calculation procedure. Coordination Chemistry Reviews, 256(1-2):279-288.
    • Schnabl, J; Suter, P; Sigel, Roland K O (2012). MINAS-a database of Metal Ions in Nucleic AcidS. Nucleic Acids Research, 40(D1):D434-D438.
    • Donghi, Daniela; Johannsen, Silke; Sigel, Roland K O; Freisinger, Eva (2012). NMR spectroscopy in bioinorganic chemistry. CHIMIA International Journal for Chemistry, 66(10):791-797.

  • Book Section

    • Spingler, Bernhard (2012). Metal Ion-Promoted Conformational Changes of Oligonucleotides. In: Sigel, Astrid; Sigel, Helmut; Sigel, Roland K O. Interplay between Metal Ions and Nucleic Acids. Dordrecht: Springer, 103-118.
    • Pechlaner, Maria; Sigel, Roland K O (2012). Characterization of metal ion-nucleic acid interactions in solution. In: Sigel, Astrid; Sigel, Helmut; Sigel, Roland K O. Interplay between Metal Ions and Nucleic Acids: Metal Ions in Life Science. Dordrecht: Springer, 1-42.

• 2011

  • Journal Article

    • Al-Sogair, F M; Operschall, B P; Sigel, Astrid; Sigel, Helmut; Schnabl, J; Sigel, Roland K O (2011). Probing the metal-ion-binding strength of the hydroxyl group. Chemical Reviews, 111(8):4964-5003.
    • Knobloch, B; Mucha, A; Operschall, B P; Sigel, Helmut; Jeżowska‐Bojczuk, Małgorzata; Kozlowski, H; Sigel, Roland K O (2011). Stability and Structure of Mixed-Ligand Metal Ion Complexes That Contain Ni(2+), Cu(2+), or Zn(2+), and Histamine, as well as Adenosine 5 `-Triphosphate (ATP(4-)) or Uridine 5 `-Triphosphate (UTP(4-)): An Intricate Network of Equilibria. Chemistry - A European Journal, 17(19):5393-5403.
    • Gallo, S; Mundwiler, S; Alberto, R; Sigel, Roland K O (2011). The change of corrin-amides to carboxylates leads to altered structures of the B(12)-responding btuB riboswitch. Chemical Communications, 47(1):403-405.

  • Book Section

    • Donghi, D; Schnabl, J (2011). Multiple roles of metal ions in large ribozymes. In: Sigel, Astrid; Sigel, Helmut; Sigel, Roland K O. Structural and Catalytic Roles of Metal Ions in RNA. Cambridge: Royal Society of Chemistry, 197-234.
    • Erat, M C; Sigel, Roland K O (2011). Methods to detect and characterize metal ion binding sites in RNA. In: Sigel, Astrid; Sigel, Helmut; Sigel, Roland K O. Structural and Catalytic Roles of Metal Ions in RNA. Cambridge: RSC Publishing, 37-100.

• 2010

  • Journal Article

    • Sigel, Roland K O (2010). A lecture tour through Hungary. CHIMIA International Journal for Chemistry, 64(5):333.
    • Johannsen, S; Megger, N; Boehme, D; Sigel, Roland K O; Mueller, J (2010). Solution structure of a DNA double helix with consecutive metal-mediated base pairs. Nature Chemistry, 2(3):229-234.
    • Erat, M C; Kovacs, H; Sigel, Roland K O (2010). Metal ion-N7 coordination in a ribozyme branch domain by NMR. Journal of Inorganic Biochemistry, 104(5):611-613.
    • Sigel, Roland K O; Gallo, S (2010). Shaping RNA structures with metal ions and metal ion complexes. CHIMIA International Journal for Chemistry, 64(3):126-131.
    • Schnabl, J; Sigel, Roland K O (2010). Controlling ribozyme activity by metal ions. Current Opinion in Chemical Biology, 14(2):269-275.
    • Sigel, Roland K O; Sigel, Helmut (2010). A stability concept for metal ion coordination to single-stranded nucleic acids and affinities of individual sites. Accounts of Chemical Research, 43(7):974-984.

  • Edited Scientific Work

    • Edited by: Sigel, Astrid; Sigel, Helmut; Sigel, Roland K O (2010). Cambridge, UK: Royal Society of Chemistry. Organometallics in environment and toxicology.

Pagination